PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr8g018410.1
Common NameMTR_8g018410
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 287aa    MW: 31820.4 Da    PI: 9.2807
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr8g018410.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.52.4e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT eE++ l+ +++ +G+g Wk+I    +     + R+  ++k++w++
  Medtr8g018410.1  5 KLKWTNEEEDALIAGIETHGPGKWKAILLDPQfgpllTSRSNIDLKDKWRN 55
                     689***********************************************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.254161IPR017930Myb domain
SuperFamilySSF466899.33E-15358IPR009057Homeodomain-like
SMARTSM007172.9E-7459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.6E-12556IPR009057Homeodomain-like
PfamPF002497.0E-8556IPR001005SANT/Myb domain
CDDcd116601.27E-18757No hitNo description
SMARTSM005261.0E-13116180IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.5E-14117191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467852.07E-14117197IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150422.869118186IPR005818Linker histone H1/H5, domain H15
PfamPF005386.5E-11120177IPR005818Linker histone H1/H5, domain H15
CDDcd000735.01E-11120197No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MGNQKLKWTN EEEDALIAGI ETHGPGKWKA ILLDPQFGPL LTSRSNIDLK DKWRNMNVNN  60
ISQVPKFPKC KPDSPAPVSS SGAAVDQTVA LPSSDVVNNV PPPPPPPLQI EQDVVKNNTP  120
RYDVMIYEAL STLKDTNGSD VIAIASFIEQ KHQVPQNFKK SLKARLRMLV GHGKLEKEQN  180
CFKIKEALSV KKSPSPKQKE AKPSPSPKRK MVRPKRQSSD SDDMLKEAAE TAAYIIAETE  240
NKSYLATEAV KETEKFSRMA EGNDAMLLLA EQVYEQCLRG ETIKWA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.18240.0flower| root| stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1419960.0BT141996.1 Medicago truncatula clone JCVI-FLMt-4D19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627170.10.0MYB transcription factor MYB91
TrEMBLG7LI960.0G7LI96_MEDTR; MYB transcription factor MYB91
STRINGGLYMA07G00930.14e-90(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.25e-57MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]